As Anakin leads an assault on Separatist forces one of the clones under his command suffers a mental break, turning his weapon on a Jedi ally. And when Count Dooku orders the clone captured Anakin, Rex, and Fives put themselves on the line to try and save the killer.

When Clone Trooper Tup is returned to Kamino for examination, Fives accompanies his friend -- only to uncover an unsettling secret about the entire clone project.

The Chancellor orders Tup's body transported to Coruscant for further study, but Fives acts against orders to uncover the truth about the chip implanted in Tup's head.

Fives hopes to gain a personal audience with Chancellor Palpatine, only to find himself on the run from the Republic forces to which he once swore his allegiance.

While visiting the planet Scipio Padmé Amidala receives a request for help from Clovis, a duplicitous old friend who is being targeted by the bounty hunter Embo.

Clovis seeks help from Padme to convince the Senate to elevate him to the head of the Banking Clan in the hopes of ending its corruption, putting stress on her relationship with Anakin.

After Clovis is installed as head of the Banking Clan on Scipio Dooku springs his trap, putting Clovis and Senator Amidala in the middle of all-out war.

When the spiritual leaders of the planet Bardotta begin to vanish without a trace, the Queen calls upon her old friend in the Republic Senate -- Jar Jar Binks, who arrives with Mace Windu to seek the truth behind an ancient prophecy.

Jar Jar and Mace Windu go in search of Julia, the Bardottan queen who has been kidnapped by a fanatical cult with secret ties to the Night Sisters.

After the lightsaber of the late Jedi Master Sifo-Dyas is discovered Anakin and Obi-Wan are sent to investigate his death, while Yoda questions the former Chancellor. With the Jedi on the verge of discovering the secret of the clone army's creation, Darth Sidious sends his apprentice to tie up loose ends.

When Yoda hears Qui-Gon Jinn's voice from beyond the grave, the Jedi Council grows concerned that he may be vulnerable to enemy influence.

Yoda arrives at a planet that is one of the wellsprings of the Force, where he hopes that the mysterious inhabitants will teach him the secret of immortality hinted at by Qui-Gon. But before he can take the next step, Yoda must confront the darkness deep within himself.

Yoda arrives on the ancient world of Moraband to confront the ancient evil of the Sith and attempt to learn the identity of the Jedi's greatest enemy, and finds himself face-to-face with Darth Sidious.