In the wake of a mysterious attack that kills her family, Jax begins her new life at the Fleet Training Academy -- where her plans to learn the truth about her parents' death are quickly frustrated.
After protesting the arrival of a powerful Adari spiritual leader on campus, Atria finds herself caught up in an effort to aid the clone resistance movement back on her homeworld.
After a war veteran attacks Ralen, Jax and Greg pull on a thread that leads them into a conspiracy involving a legendary battle cruiser said to have been destroyed during the war.
Xander recruits Jax into the academy's command training program, only for the trainees to find themselves responding to an emergency distress signal from a secret laboratory.
Thomas's telepathic father arrives on campus looking for help from his estranged son -- to steal an alien artifact that will get him out of trouble with a criminal syndicate.
Pilar's strange behavior leads her friends to the discovery that her bio-organic implants have been hacked by someone who is tormenting her for revenge.
After dreams of a previous life Jax turns to Ralen for help recovering a disturbing memory, in which Jax believes she killed a man who died more than 150 years ago. Meanwhile Xander is tasked with identifying a mole inside the C.I.S.
As the students prepare to leave for break Xander recruits Jax for a mission that requires her to rekindle a relationship with an old friend in order to gain intel that could be vital to the Earth Confederacy.
After traveling through a portal Jax, Xander, and Ralen find themselves on a distant world where a lost human colony thrived more than a century ago -- until they were destroyed by the same aliens Jax encountered at New Portland.
While the students prepare for the coming Armistice Day Dance, Ralen gets to know his wife -- and Xander reconsiders his loyalty to Professor Osborn. Elsewhere, Thomas wakes up in the hands of Tierney and the Hypatia Syndicate.
Jax seeks answers about her true nature after she opens Pandora's Box and sees a disturbing vision. A younger Harlan Fried returns to retake control of Parallax, sending a bounty hunter to the Academy to hunt for Jax.
Under the control of the Hypacia Syndicate, Jax awakens in a dream world where she is living a version of her life in the distant past. Back at the Academy a copy of Jax appears, while on Adar Atria's efforts to liberate the clones suffers a major setback.
